Internal Loop Motif Atlas Release 4.20

#	Motif	Num Nts	Instances
1	IL_06299.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (21) Single bulged U (20) Single bulged C (14) Multiple bulged bases (8) Single bulged G (8) Basepair outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (2) Stack outside cWW (2) Major groove platform (1) Intercalation pocket (1)	4	102
2	IL_06721.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents UU cWW (7) Isolated cWH basepair (4) CA cWW (3) Isolated non-canonical cWW with bulges (3) Isolated near basepair (2) CC cWW (1) UU cWW water inserted (1) Decoding loop related (1)	6	100
3	IL_37203.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Decoding loop related (8) Single stack bend (2) Stack and bulge (2)	5	23
4	IL_35487.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (16) Minor groove platform related (1) Decoding loop related (1)	8	22
5	IL_44997.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform (8) Major groove platform; stack outside cWW (3)	5	21
6	IL_30941.1 View exemplar Basepair signature: cWW-cWH-cWW History status: New id, no parents Isolated cWH basepair (14) Decoding loop with one bulged A (1) cWH basepair with bulged bases (1)	6	17
7	IL_17071.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (8) Multiple bulged bases (1)	5	14
8	IL_65196.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: New id, no parents Triple sheared (12) AAA cross-strand stack (1)	10	13
9	IL_41867.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: New id, no parents Kink-turn (8) Kink-turn with non-sequential stacking (1)	12	12
10	IL_26980.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (4) Single bulged C (1)	4	11
11	IL_08458.1 View exemplar Basepair signature: cWW-cSW-cWW History status: New id, no parents Major groove minor groove platform; mini C-loop (4) Major groove outside cWW, minor groove, intercalation pocket (3)	6	10
12	IL_19433.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-cWW History status: New id, no parents Major groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	7	9
13	IL_20288.1 View exemplar Basepair signature: cWW-cWW-R-tHS-cWW History status: New id, no parents UAA/GAN related (4) Tandem non-canonical cWW pairs (2) UAA/GAN variation (1)	9	8
14	IL_20448.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS-cWW (3) Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	8
15	IL_26750.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: New id, no parents C-loop (5)	7	7
16	IL_79492.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (5)	8	7
17	IL_55909.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Minor groove platform (1)	5	7
18	IL_81306.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents Sarcin-Ricin target in LSU H95; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	6
19	IL_56977.1 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (4)	9	6
20	IL_05664.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: New id, no parents UAA/GAN (3)	9	6
21	IL_50231.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents Major groove platform; stack outside cWW (2)	6	6
22	IL_72178.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 8x7 Sarcin-Ricin; G-bulge (5)	15	6
23	IL_27175.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: New id, no parents tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	6
24	IL_33134.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn from U4 (5)	10	5
25	IL_21806.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	5
26	IL_49481.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: New id, no parents	7	5
27	IL_67141.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: New id, no parents Bacterial 5S Loop E (4)	18	4
28	IL_83117.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW History status: New id, no parents Pseudoknot (1)	9	4
29	IL_90729.1 View exemplar Basepair signature: cWW-tHS-cWW History status: New id, no parents Isolated tHS basepair with bulges (2)	6	4
30	IL_53339.1 View exemplar Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW History status: New id, no parents	10	4
31	IL_70554.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: New id, no parents	19	4
32	IL_04989.1 View exemplar Basepair signature: cWW-tSH-cWS-cWW History status: New id, no parents	8	4
33	IL_83880.1 View exemplar Basepair signature: cWW-cWS-cWW History status: New id, no parents Isolated near basepair (1)	6	4
34	IL_82585.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: New id, no parents Major groove minor groove platform with extra cWW (1)	8	3
35	IL_46529.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: New id, no parents tSH-tHW-tWH-tHS (3)	12	3
36	IL_95715.1 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: New id, no parents	11	3
37	IL_07218.1 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (2) Other IL (1)	8	3
38	IL_00327.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: New id, no parents Quadruple sheared (2)	12	3
39	IL_18933.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	3
40	IL_86674.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: New id, no parents	12	3
41	IL_29179.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: New id, no parents	10	3
42	IL_97475.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (1)	4	3
43	IL_22798.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: New id, no parents cWH basepair and non-canonical AC (3)	8	3
44	IL_58361.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	3
45	IL_05677.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: New id, no parents	11	3
46	IL_40492.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: New id, no parents Kink-turn (3)	12	3
47	IL_86064.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents Isolated non-canonical cWW with bulges (1)	6	3
48	IL_16786.1 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: New id, no parents	14	2
49	IL_47652.1 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: New id, no parents tHW-tHW cross-strand stack (1)	11	2
50	IL_65811.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	2
51	IL_22542.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: New id, no parents	18	2
52	IL_69405.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn (2)	12	2
53	IL_66089.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	2
54	IL_38643.1 View exemplar Basepair signature: cWW-cHH-cWW History status: New id, no parents	5	2
55	IL_90032.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW History status: New id, no parents	8	2
56	IL_32119.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform with extra pair (2)	7	2
57	IL_51529.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents	6	2
58	IL_06621.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (1)	4	2
59	IL_40885.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: New id, no parents	10	2
60	IL_24716.1 View exemplar Basepair signature: cWW-tWH-L-tWW-tHW-cSH-cWW History status: New id, no parents	11	2
61	IL_18726.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: New id, no parents	8	2
62	IL_29478.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: New id, no parents	12	2
63	IL_37279.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
64	IL_83817.1 View exemplar Basepair signature: cWW-cSS-cSS-R-cWW History status: New id, no parents 180 degree turn (1)	5	2
65	IL_85191.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-cSS-R-R-L-cWW History status: New id, no parents	13	2
66	IL_05941.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-bif-cWW History status: New id, no parents	13	2
67	IL_15173.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents	5	2
68	IL_65894.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents Minor groove platform (2)	6	2
69	IL_14786.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (2)	8	2
70	IL_76425.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: New id, no parents	10	2
71	IL_83819.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	2
72	IL_96443.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	2
73	IL_21877.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-bif-bif-cWW-cWW History status: New id, no parents	14	2
74	IL_79032.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: New id, no parents	12	2
75	IL_43867.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: New id, no parents	13	1
76	IL_63384.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: New id, no parents	14	1
77	IL_49796.1 View exemplar Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW History status: New id, no parents	13	1
78	IL_81181.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
79	IL_40512.1 View exemplar Basepair signature: cWW-L-R-cWW History status: New id, no parents	6	1
80	IL_00887.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	13	1
81	IL_92297.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: New id, no parents	21	1
82	IL_62685.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
83	IL_40438.1 View exemplar Basepair signature: cWW-cWW-bif-cSH-cWW History status: New id, no parents	7	1
84	IL_70150.1 View exemplar Basepair signature: cWW-R-tSH-L-tHS-cWW-cWW History status: New id, no parents	12	1
85	IL_74435.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: New id, no parents	11	1
86	IL_63777.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: New id, no parents Minor groove platform with extra cWW (1)	7	1
87	IL_75833.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: New id, no parents	8	1
88	IL_41057.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: New id, no parents	10	1
89	IL_81431.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: New id, no parents tSH-tHW (1)	9	1
90	IL_54265.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
91	IL_25757.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: New id, no parents	8	1
92	IL_07721.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: New id, no parents	10	1
93	IL_14767.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: New id, no parents	10	1
94	IL_95006.1 View exemplar Basepair signature: cWW-R-R-cWW History status: New id, no parents	6	1
95	IL_11702.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (1)	5	1
96	IL_27925.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: New id, no parents	7	1
97	IL_58826.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: New id, no parents	11	1
98	IL_75462.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: New id, no parents	16	1
99	IL_08751.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: New id, no parents	11	1
100	IL_94154.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: New id, no parents	7	1
101	IL_58900.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: New id, no parents	11	1
102	IL_92633.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: New id, no parents	23	1
103	IL_21208.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: New id, no parents	12	1
104	IL_30552.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW History status: New id, no parents	8	1
105	IL_91964.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: New id, no parents	12	1
106	IL_40163.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: New id, no parents	13	1
107	IL_13772.1 View exemplar Basepair signature: cWW-L-L-tSW-tSS-tHW-L-cWW History status: New id, no parents	11	1
108	IL_71387.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: New id, no parents	20	1
109	IL_71641.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents Decoding loop related (1)	9	1
110	IL_63732.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: New id, no parents	10	1
111	IL_14408.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: New id, no parents	10	1
112	IL_49943.1 View exemplar Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW History status: New id, no parents	17	1
113	IL_11352.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: New id, no parents Vitamin B12 Aptamer (1)	11	1
114	IL_91998.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: New id, no parents	15	1
115	IL_82641.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW-bif-cWW History status: New id, no parents	16	1
116	IL_83127.1 View exemplar Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R History status: New id, no parents	36	1
117	IL_18000.1 View exemplar Basepair signature: cWW-tSH-tHW-L-bif-cWW History status: New id, no parents	11	1
118	IL_79990.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: New id, no parents	11	1
119	IL_65075.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW History status: New id, no parents	12	1
120	IL_16837.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
121	IL_36082.1 View exemplar Basepair signature: cWW-tWW-cWW History status: New id, no parents	6	1
122	IL_65930.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-cWW History status: New id, no parents	11	1
123	IL_48611.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (1)	8	1
124	IL_07155.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: New id, no parents	18	1
125	IL_15791.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: New id, no parents	14	1
126	IL_67446.1 View exemplar Basepair signature: cWW-tSH-L-R-R-R-R-tSS-cWW History status: New id, no parents	13	1
127	IL_85117.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
128	IL_47915.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents	6	1
129	IL_99101.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: New id, no parents	10	1
130	IL_61903.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: New id, no parents 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
131	IL_77830.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: New id, no parents	8	1
132	IL_31632.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW History status: New id, no parents	12	1
133	IL_97439.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: New id, no parents	7	1
134	IL_85783.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: New id, no parents	14	1
135	IL_22789.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: New id, no parents	13	1
136	IL_70154.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: New id, no parents	10	1
137	IL_17597.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	1
138	IL_45603.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: New id, no parents Kink-turn related (1)	11	1
139	IL_70323.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
140	IL_92117.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: New id, no parents	11	1
141	IL_69642.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: New id, no parents	11	1
142	IL_85434.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: New id, no parents	9	1
143	IL_80790.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: New id, no parents Symmetric double minor groove platform (1)	9	1
144	IL_13377.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW History status: New id, no parents	14	1
145	IL_26350.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
146	IL_72535.1 View exemplar Basepair signature: cWW-bif-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS with extra cWW pairs (1)	14	1
147	IL_28272.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: New id, no parents	14	1
148	IL_17508.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: New id, no parents UAA/GAN variation (1)	9	1
149	IL_42601.1 View exemplar Basepair signature: cWW-R-R-tWS-L-R-cWW History status: New id, no parents	10	1

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New id, no parents 149;

Internal Loop Motif Atlas Release 4.20 Download Csv Json

Internal Loop Motif Atlas Release 4.20

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