Internal Loop Motif Atlas Release 4.18

#	Motif	Num Nts	Instances
1	IL_11857.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (21) Single bulged U (20) Single bulged C (14) Multiple bulged bases (8) Single bulged G (8) Basepair outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (2) Stack outside cWW (2) Major groove platform (1) Intercalation pocket (1)	4	102
2	IL_59444.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents UU cWW (7) Isolated cWH basepair (4) CA cWW (3) Isolated non-canonical cWW with bulges (3) Isolated near basepair (2) CC cWW (1) UU cWW water inserted (1) Decoding loop related (1)	6	100
3	IL_02730.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Decoding loop related (8) Single stack bend (2) Stack and bulge (2)	5	23
4	IL_91453.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (16) Minor groove platform related (1) Decoding loop related (1)	8	22
5	IL_84602.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform (8) Major groove platform; stack outside cWW (3)	5	21
6	IL_84438.1 View exemplar Basepair signature: cWW-cWH-cWW History status: New id, no parents Isolated cWH basepair (14) Decoding loop with one bulged A (1) cWH basepair with bulged bases (1)	6	17
7	IL_19020.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (8) Multiple bulged bases (1)	5	14
8	IL_64566.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: New id, no parents Triple sheared (12) AAA cross-strand stack (1)	10	13
9	IL_65244.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: New id, no parents Kink-turn (8) Kink-turn with non-sequential stacking (1)	12	12
10	IL_11698.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (4) Single bulged C (1)	4	11
11	IL_56398.1 View exemplar Basepair signature: cWW-cSW-cWW History status: New id, no parents Major groove minor groove platform; mini C-loop (4) Major groove outside cWW, minor groove, intercalation pocket (3)	6	10
12	IL_13851.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-cWW History status: New id, no parents Major groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	7	9
13	IL_91714.1 View exemplar Basepair signature: cWW-cWW-R-tHS-cWW History status: New id, no parents UAA/GAN related (4) Tandem non-canonical cWW pairs (2) UAA/GAN variation (1)	9	8
14	IL_97471.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS-cWW (3) Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	8
15	IL_68657.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (5)	8	7
16	IL_03536.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Minor groove platform (1)	5	7
17	IL_12185.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: New id, no parents C-loop (5)	7	7
18	IL_93755.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents Major groove platform; stack outside cWW (2)	6	6
19	IL_83425.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 8x7 Sarcin-Ricin; G-bulge (5)	15	6
20	IL_32543.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: New id, no parents tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	6
21	IL_23345.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents Sarcin-Ricin target in LSU H95; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	6
22	IL_66028.1 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (4)	9	6
23	IL_40000.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: New id, no parents UAA/GAN (3)	9	6
24	IL_29798.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	5
25	IL_90678.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: New id, no parents	7	5
26	IL_39138.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn from U4 (5)	10	5
27	IL_48251.1 View exemplar Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW History status: New id, no parents	10	4
28	IL_80677.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: New id, no parents	19	4
29	IL_21998.1 View exemplar Basepair signature: cWW-tSH-cWS-cWW History status: New id, no parents	8	4
30	IL_65484.1 View exemplar Basepair signature: cWW-cWS-cWW History status: New id, no parents Isolated near basepair (1)	6	4
31	IL_04068.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: New id, no parents Bacterial 5S Loop E (4)	18	4
32	IL_37506.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW History status: New id, no parents Pseudoknot (1)	9	4
33	IL_87002.1 View exemplar Basepair signature: cWW-tHS-cWW History status: New id, no parents Isolated tHS basepair with bulges (2)	6	4
34	IL_91800.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	3
35	IL_91795.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: New id, no parents	11	3
36	IL_58638.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: New id, no parents Kink-turn (3)	12	3
37	IL_33345.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents Isolated non-canonical cWW with bulges (1)	6	3
38	IL_91828.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: New id, no parents Major groove minor groove platform with extra cWW (1)	8	3
39	IL_81818.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: New id, no parents tSH-tHW-tWH-tHS (3)	12	3
40	IL_11875.1 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: New id, no parents	11	3
41	IL_04628.1 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (2) Other IL (1)	8	3
42	IL_25483.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: New id, no parents Quadruple sheared (2)	12	3
43	IL_54811.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	3
44	IL_37564.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: New id, no parents	12	3
45	IL_79112.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: New id, no parents	10	3
46	IL_86293.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (1)	4	3
47	IL_20934.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: New id, no parents cWH basepair and non-canonical AC (3)	8	3
48	IL_15230.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW History status: New id, no parents	8	2
49	IL_82312.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform with extra pair (2)	7	2
50	IL_04806.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents	6	2
51	IL_93665.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (1)	4	2
52	IL_96152.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: New id, no parents	10	2
53	IL_74827.1 View exemplar Basepair signature: cWW-tWH-L-tWW-tHW-cSH-cWW History status: New id, no parents	11	2
54	IL_57932.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: New id, no parents	8	2
55	IL_08082.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: New id, no parents	12	2
56	IL_10002.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
57	IL_61702.1 View exemplar Basepair signature: cWW-cSS-cSS-R-cWW History status: New id, no parents 180 degree turn (1)	5	2
58	IL_38528.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-cSS-R-R-L-cWW History status: New id, no parents	13	2
59	IL_82787.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-bif-cWW History status: New id, no parents	13	2
60	IL_52771.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents	5	2
61	IL_16595.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents Minor groove platform (2)	6	2
62	IL_31785.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (2)	8	2
63	IL_33299.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: New id, no parents	10	2
64	IL_74381.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	2
65	IL_07046.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	2
66	IL_43140.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-bif-bif-cWW-cWW History status: New id, no parents	14	2
67	IL_38781.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: New id, no parents	12	2
68	IL_17478.1 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: New id, no parents	14	2
69	IL_02759.1 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: New id, no parents tHW-tHW cross-strand stack (1)	11	2
70	IL_67820.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	2
71	IL_88446.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: New id, no parents	18	2
72	IL_81689.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn (2)	12	2
73	IL_70669.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	2
74	IL_65707.1 View exemplar Basepair signature: cWW-cHH-cWW History status: New id, no parents	5	2
75	IL_01630.1 View exemplar Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW History status: New id, no parents	17	1
76	IL_10339.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: New id, no parents Vitamin B12 Aptamer (1)	11	1
77	IL_66069.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: New id, no parents	15	1
78	IL_62249.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW-bif-cWW History status: New id, no parents	16	1
79	IL_76419.1 View exemplar Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R History status: New id, no parents	36	1
80	IL_30020.1 View exemplar Basepair signature: cWW-tSH-tHW-L-bif-cWW History status: New id, no parents	11	1
81	IL_88971.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: New id, no parents	11	1
82	IL_74003.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW History status: New id, no parents	12	1
83	IL_18820.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
84	IL_00574.1 View exemplar Basepair signature: cWW-tWW-cWW History status: New id, no parents	6	1
85	IL_96701.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-cWW History status: New id, no parents	11	1
86	IL_79232.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (1)	8	1
87	IL_14405.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: New id, no parents	18	1
88	IL_07151.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: New id, no parents	14	1
89	IL_64515.1 View exemplar Basepair signature: cWW-tSH-L-R-R-R-R-tSS-cWW History status: New id, no parents	13	1
90	IL_83529.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
91	IL_30921.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents	6	1
92	IL_04697.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: New id, no parents	10	1
93	IL_27732.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: New id, no parents 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
94	IL_63137.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: New id, no parents	8	1
95	IL_31354.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW History status: New id, no parents	12	1
96	IL_14070.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: New id, no parents	7	1
97	IL_50358.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: New id, no parents	14	1
98	IL_89009.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: New id, no parents	13	1
99	IL_21947.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: New id, no parents	10	1
100	IL_95092.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	1
101	IL_59811.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: New id, no parents Kink-turn related (1)	11	1
102	IL_18751.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
103	IL_19724.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: New id, no parents	11	1
104	IL_06016.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: New id, no parents	11	1
105	IL_93984.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: New id, no parents	9	1
106	IL_46485.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: New id, no parents Symmetric double minor groove platform (1)	9	1
107	IL_34319.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW History status: New id, no parents	14	1
108	IL_95414.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
109	IL_42358.1 View exemplar Basepair signature: cWW-bif-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS with extra cWW pairs (1)	14	1
110	IL_99630.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: New id, no parents	14	1
111	IL_09406.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: New id, no parents UAA/GAN variation (1)	9	1
112	IL_53986.1 View exemplar Basepair signature: cWW-R-R-tWS-L-R-cWW History status: New id, no parents	10	1
113	IL_97819.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: New id, no parents	13	1
114	IL_17872.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: New id, no parents	14	1
115	IL_92567.1 View exemplar Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW History status: New id, no parents	13	1
116	IL_73028.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
117	IL_72355.1 View exemplar Basepair signature: cWW-L-R-cWW History status: New id, no parents	6	1
118	IL_36549.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	13	1
119	IL_69977.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: New id, no parents	21	1
120	IL_01563.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
121	IL_45966.1 View exemplar Basepair signature: cWW-cWW-bif-cSH-cWW History status: New id, no parents	7	1
122	IL_40048.1 View exemplar Basepair signature: cWW-R-tSH-L-tHS-cWW-cWW History status: New id, no parents	12	1
123	IL_57249.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: New id, no parents	11	1
124	IL_87221.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: New id, no parents Minor groove platform with extra cWW (1)	7	1
125	IL_63396.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: New id, no parents	8	1
126	IL_24145.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: New id, no parents	10	1
127	IL_17693.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: New id, no parents tSH-tHW (1)	9	1
128	IL_77075.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
129	IL_32017.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: New id, no parents	8	1
130	IL_29712.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: New id, no parents	10	1
131	IL_39554.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	10	1
132	IL_20675.1 View exemplar Basepair signature: cWW-R-R-cWW History status: New id, no parents	6	1
133	IL_51658.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (1)	5	1
134	IL_50623.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: New id, no parents	7	1
135	IL_00953.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: New id, no parents	11	1
136	IL_40511.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: New id, no parents	16	1
137	IL_28160.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: New id, no parents	11	1
138	IL_75406.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: New id, no parents	7	1
139	IL_35047.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: New id, no parents	11	1
140	IL_56981.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: New id, no parents	23	1
141	IL_60225.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: New id, no parents	12	1
142	IL_77502.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW History status: New id, no parents	8	1
143	IL_59316.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: New id, no parents	12	1
144	IL_02810.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: New id, no parents	13	1
145	IL_80606.1 View exemplar Basepair signature: cWW-L-L-tSW-tSS-tHW-L-cWW History status: New id, no parents	11	1
146	IL_91911.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: New id, no parents	20	1
147	IL_33911.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents Decoding loop related (1)	9	1
148	IL_34335.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: New id, no parents	10	1
149	IL_04634.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: New id, no parents	10	1

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Nucleotide numbers

New id, no parents 149;

Internal Loop Motif Atlas Release 4.18 Download Csv Json

Internal Loop Motif Atlas Release 4.18

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