Internal Loop Motif Atlas Release 4.12

#	Motif	Num Nts	Instances
1	IL_02114.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (21) Single bulged U (20) Single bulged C (14) Multiple bulged bases (8) Single bulged G (8) Basepair outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (2) Stack outside cWW (2) Major groove platform (1) Intercalation pocket (1)	4	102
2	IL_13315.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents UU cWW (7) Isolated cWH basepair (4) CA cWW (3) Isolated non-canonical cWW with bulges (3) Isolated near basepair (2) CC cWW (1) UU cWW water inserted (1) Decoding loop related (1)	6	100
3	IL_13640.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Decoding loop related (8) Single stack bend (2) Stack and bulge (2)	5	23
4	IL_85495.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (16) Minor groove platform related (1) Decoding loop related (1)	8	22
5	IL_36504.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform (8) Major groove platform; stack outside cWW (3)	5	21
6	IL_04355.1 View exemplar Basepair signature: cWW-cWH-cWW History status: New id, no parents Isolated cWH basepair (14) Decoding loop with one bulged A (1) cWH basepair with bulged bases (1)	6	17
7	IL_05380.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (8) Multiple bulged bases (1)	5	14
8	IL_68741.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: New id, no parents Triple sheared (12) AAA cross-strand stack (1)	10	13
9	IL_25112.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: New id, no parents Kink-turn (8) Kink-turn with non-sequential stacking (1)	12	12
10	IL_39902.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (4) Single bulged C (1)	4	11
11	IL_15188.1 View exemplar Basepair signature: cWW-cSW-cWW History status: New id, no parents Major groove minor groove platform; mini C-loop (4) Major groove outside cWW, minor groove, intercalation pocket (3)	6	10
12	IL_96797.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-cWW History status: New id, no parents Major groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	7	9
13	IL_98609.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS-cWW (3) Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	8
14	IL_32383.1 View exemplar Basepair signature: cWW-cWW-R-tHS-cWW History status: New id, no parents UAA/GAN related (4) Tandem non-canonical cWW pairs (2) UAA/GAN variation (1)	9	8
15	IL_80365.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Minor groove platform (1)	5	7
16	IL_12187.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: New id, no parents C-loop (5)	7	7
17	IL_15929.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (5)	8	7
18	IL_81372.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 8x7 Sarcin-Ricin; G-bulge (5)	15	6
19	IL_73749.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: New id, no parents tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	6
20	IL_88195.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents Sarcin-Ricin target in LSU H95; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	6
21	IL_44509.1 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (4)	9	6
22	IL_91625.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: New id, no parents UAA/GAN (3)	9	6
23	IL_03491.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents Major groove platform; stack outside cWW (2)	6	6
24	IL_70247.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: New id, no parents	7	5
25	IL_79108.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn from U4 (5)	10	5
26	IL_07896.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	5
27	IL_99945.1 View exemplar Basepair signature: cWW-cWS-cWW History status: New id, no parents Isolated near basepair (1)	6	4
28	IL_70784.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: New id, no parents Bacterial 5S Loop E (4)	18	4
29	IL_78749.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW History status: New id, no parents Pseudoknot (1)	9	4
30	IL_30204.1 View exemplar Basepair signature: cWW-tHS-cWW History status: New id, no parents Isolated tHS basepair with bulges (2)	6	4
31	IL_39141.1 View exemplar Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW History status: New id, no parents	10	4
32	IL_65015.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: New id, no parents	19	4
33	IL_08765.1 View exemplar Basepair signature: cWW-tSH-cWS-cWW History status: New id, no parents	8	4
34	IL_40362.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: New id, no parents Kink-turn (3)	12	3
35	IL_33251.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents Isolated non-canonical cWW with bulges (1)	6	3
36	IL_49614.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: New id, no parents Major groove minor groove platform with extra cWW (1)	8	3
37	IL_08400.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: New id, no parents tSH-tHW-tWH-tHS (3)	12	3
38	IL_53153.1 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (2) Other IL (1)	8	3
39	IL_11741.1 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: New id, no parents	11	3
40	IL_82358.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	3
41	IL_18314.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: New id, no parents Quadruple sheared (2)	12	3
42	IL_49570.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: New id, no parents	10	3
43	IL_07448.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: New id, no parents	12	3
44	IL_83282.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: New id, no parents cWH basepair and non-canonical AC (3)	8	3
45	IL_96487.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (1)	4	3
46	IL_05121.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	3
47	IL_10924.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: New id, no parents	11	3
48	IL_64584.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (2)	8	2
49	IL_53025.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: New id, no parents	10	2
50	IL_55730.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	2
51	IL_87538.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-bif-bif-cWW-cWW History status: New id, no parents	14	2
52	IL_02909.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: New id, no parents	12	2
53	IL_55503.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	2
54	IL_34221.1 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: New id, no parents	14	2
55	IL_33938.1 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: New id, no parents tHW-tHW cross-strand stack (1)	11	2
56	IL_23663.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	2
57	IL_45679.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: New id, no parents	18	2
58	IL_71930.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn (2)	12	2
59	IL_23053.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	2
60	IL_63016.1 View exemplar Basepair signature: cWW-cHH-cWW History status: New id, no parents	5	2
61	IL_35906.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform with extra pair (2)	7	2
62	IL_63615.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW History status: New id, no parents	8	2
63	IL_05978.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents	6	2
64	IL_13934.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (1)	4	2
65	IL_17796.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: New id, no parents	10	2
66	IL_83305.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: New id, no parents	8	2
67	IL_01167.1 View exemplar Basepair signature: cWW-tWH-L-tWW-tHW-cSH-cWW History status: New id, no parents	11	2
68	IL_27879.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
69	IL_40465.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: New id, no parents	12	2
70	IL_97443.1 View exemplar Basepair signature: cWW-cSS-cSS-R-cWW History status: New id, no parents 180 degree turn (1)	5	2
71	IL_61344.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-cSS-R-R-L-cWW History status: New id, no parents	13	2
72	IL_61259.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-bif-cWW History status: New id, no parents	13	2
73	IL_19169.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents	5	2
74	IL_24338.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents Minor groove platform (2)	6	2
75	IL_63413.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: New id, no parents	11	1
76	IL_41873.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: New id, no parents	11	1
77	IL_22080.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: New id, no parents	9	1
78	IL_82806.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW History status: New id, no parents	14	1
79	IL_29199.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: New id, no parents Symmetric double minor groove platform (1)	9	1
80	IL_36620.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
81	IL_30033.1 View exemplar Basepair signature: cWW-bif-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS with extra cWW pairs (1)	14	1
82	IL_04640.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: New id, no parents	14	1
83	IL_81845.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: New id, no parents UAA/GAN variation (1)	9	1
84	IL_64717.1 View exemplar Basepair signature: cWW-R-R-tWS-L-R-cWW History status: New id, no parents	10	1
85	IL_28481.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: New id, no parents	13	1
86	IL_85874.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: New id, no parents	14	1
87	IL_40384.1 View exemplar Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW History status: New id, no parents	13	1
88	IL_07600.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
89	IL_16116.1 View exemplar Basepair signature: cWW-L-R-cWW History status: New id, no parents	6	1
90	IL_92310.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: New id, no parents	21	1
91	IL_94689.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	13	1
92	IL_65809.1 View exemplar Basepair signature: cWW-cWW-bif-cSH-cWW History status: New id, no parents	7	1
93	IL_98888.1 View exemplar Basepair signature: cWW-R-tSH-L-tHS-cWW-cWW History status: New id, no parents	12	1
94	IL_04343.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: New id, no parents	11	1
95	IL_52685.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
96	IL_01172.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: New id, no parents Minor groove platform with extra cWW (1)	7	1
97	IL_57292.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: New id, no parents	8	1
98	IL_47143.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: New id, no parents tSH-tHW (1)	9	1
99	IL_99813.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
100	IL_34386.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: New id, no parents	10	1
101	IL_15391.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: New id, no parents	8	1
102	IL_58386.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: New id, no parents	10	1
103	IL_17923.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: New id, no parents	10	1
104	IL_84484.1 View exemplar Basepair signature: cWW-R-R-cWW History status: New id, no parents	6	1
105	IL_10350.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (1)	5	1
106	IL_58111.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: New id, no parents	11	1
107	IL_92098.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: New id, no parents	16	1
108	IL_20631.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: New id, no parents	7	1
109	IL_87010.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: New id, no parents	7	1
110	IL_00443.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: New id, no parents	11	1
111	IL_05983.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: New id, no parents	11	1
112	IL_88655.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW History status: New id, no parents	8	1
113	IL_59829.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: New id, no parents	12	1
114	IL_23341.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: New id, no parents	23	1
115	IL_44234.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: New id, no parents	12	1
116	IL_68498.1 View exemplar Basepair signature: cWW-L-L-tSW-tSS-tHW-L-cWW History status: New id, no parents	11	1
117	IL_32918.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: New id, no parents	20	1
118	IL_55969.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: New id, no parents	13	1
119	IL_74709.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents Decoding loop related (1)	9	1
120	IL_53954.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: New id, no parents	10	1
121	IL_23877.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: New id, no parents	10	1
122	IL_48467.1 View exemplar Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW History status: New id, no parents	17	1
123	IL_27022.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW-bif-cWW History status: New id, no parents	16	1
124	IL_34650.1 View exemplar Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R History status: New id, no parents	36	1
125	IL_37973.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: New id, no parents Vitamin B12 Aptamer (1)	11	1
126	IL_95488.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: New id, no parents	15	1
127	IL_67667.1 View exemplar Basepair signature: cWW-tSH-tHW-L-bif-cWW History status: New id, no parents	11	1
128	IL_20188.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: New id, no parents	11	1
129	IL_64992.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW History status: New id, no parents	12	1
130	IL_80802.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-cWW History status: New id, no parents	11	1
131	IL_65242.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (1)	8	1
132	IL_07831.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
133	IL_48557.1 View exemplar Basepair signature: cWW-tWW-cWW History status: New id, no parents	6	1
134	IL_80623.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: New id, no parents	14	1
135	IL_75051.1 View exemplar Basepair signature: cWW-tSH-L-R-R-R-R-tSS-cWW History status: New id, no parents	13	1
136	IL_06251.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: New id, no parents	18	1
137	IL_76999.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
138	IL_07380.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents	6	1
139	IL_03016.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: New id, no parents	10	1
140	IL_14196.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: New id, no parents 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
141	IL_46162.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: New id, no parents	8	1
142	IL_53872.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: New id, no parents	7	1
143	IL_21602.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW History status: New id, no parents	12	1
144	IL_47125.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: New id, no parents	14	1
145	IL_42500.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: New id, no parents	13	1
146	IL_13716.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: New id, no parents	10	1
147	IL_19490.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: New id, no parents Kink-turn related (1)	11	1
148	IL_09761.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
149	IL_47958.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	1

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Nucleotide numbers

New id, no parents 149;

Internal Loop Motif Atlas Release 4.12 Download Csv Json

Internal Loop Motif Atlas Release 4.12

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