Internal Loop Motif Atlas Release 4.1

#	Motif	Num Nts	Instances
1	IL_05794.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (21) Single bulged U (20) Single bulged C (14) Multiple bulged bases (8) Single bulged G (8) Basepair outside cWW (2) Major groove outside cWW, minor groove, intercalation pocket (2) Stack outside cWW (2) Major groove platform (1) Intercalation pocket (1)	4	102
2	IL_15635.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents UU cWW (7) Isolated cWH basepair (4) CA cWW (3) Isolated non-canonical cWW with bulges (3) Isolated near basepair (2) CC cWW (1) UU cWW water inserted (1) Decoding loop related (1)	6	100
3	IL_18227.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Decoding loop related (8) Single stack bend (2) Stack and bulge (2)	5	23
4	IL_64129.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (16) Minor groove platform related (1) Decoding loop related (1)	8	22
5	IL_56784.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform (8) Major groove platform; stack outside cWW (3)	5	21
6	IL_52660.1 View exemplar Basepair signature: cWW-cWH-cWW History status: New id, no parents Isolated cWH basepair (14) Decoding loop with one bulged A (1) cWH basepair with bulged bases (1)	6	17
7	IL_04623.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (8) Multiple bulged bases (1)	5	14
8	IL_60813.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-cWW History status: New id, no parents Triple sheared (12) AAA cross-strand stack (1)	10	13
9	IL_49270.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-tSS-R-cWW History status: New id, no parents Kink-turn (8) Kink-turn with non-sequential stacking (1)	12	12
10	IL_16663.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (4) Single bulged C (1)	4	11
11	IL_28134.1 View exemplar Basepair signature: cWW-cSW-cWW History status: New id, no parents Major groove minor groove platform; mini C-loop (4) Major groove outside cWW, minor groove, intercalation pocket (3)	6	10
12	IL_57141.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-cWW History status: New id, no parents Major groove platform with extra cWW (2) Isolated basepair with bulged bases (1)	7	9
13	IL_53104.1 View exemplar Basepair signature: cWW-cWW-R-tHS-cWW History status: New id, no parents UAA/GAN related (4) Tandem non-canonical cWW pairs (2) UAA/GAN variation (1)	9	8
14	IL_91638.1 View exemplar Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW History status: New id, no parents tSH-tHW-tHS-cWW (3) Tandem non-canonical cWW pairs with near WC pairs (1) Other IL (1)	12	8
15	IL_93599.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (5)	8	7
16	IL_17572.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents Minor groove platform (1)	5	7
17	IL_39510.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: New id, no parents C-loop (5)	7	7
18	IL_31802.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents Sarcin-Ricin target in LSU H95; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	6
19	IL_93841.1 View exemplar Basepair signature: cWW-R-tWH-cSH-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (4)	9	6
20	IL_39604.1 View exemplar Basepair signature: cWW-tWH-L-tHS-cWW History status: New id, no parents UAA/GAN (3)	9	6
21	IL_55382.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents Major groove platform; stack outside cWW (2)	6	6
22	IL_68941.1 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 8x7 Sarcin-Ricin; G-bulge (5)	15	6
23	IL_59341.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: New id, no parents tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	10	6
24	IL_88413.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn from U4 (5)	10	5
25	IL_49977.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	5
26	IL_66668.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: New id, no parents	7	5
27	IL_42974.1 View exemplar Basepair signature: cWW-tHS-cWW History status: New id, no parents Isolated tHS basepair with bulges (2)	6	4
28	IL_11161.1 View exemplar Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW History status: New id, no parents	10	4
29	IL_63927.1 View exemplar Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW History status: New id, no parents	19	4
30	IL_86323.1 View exemplar Basepair signature: cWW-tSH-cWS-cWW History status: New id, no parents	8	4
31	IL_71457.1 View exemplar Basepair signature: cWW-cWS-cWW History status: New id, no parents Isolated near basepair (1)	6	4
32	IL_02340.1 View exemplar Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW History status: New id, no parents Bacterial 5S Loop E (4)	18	4
33	IL_90363.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW History status: New id, no parents Pseudoknot (1)	9	4
34	IL_14825.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-bif-cWW History status: New id, no parents	12	3
35	IL_50603.1 View exemplar Basepair signature: cWW-L-R-tHS-cWW-cWW History status: New id, no parents	10	3
36	IL_65324.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Single bulged A (1)	4	3
37	IL_08992.1 View exemplar Basepair signature: cWW-cWH-tWS-cWW History status: New id, no parents cWH basepair and non-canonical AC (3)	8	3
38	IL_75804.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	3
39	IL_64748.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: New id, no parents	11	3
40	IL_78754.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW History status: New id, no parents Kink-turn (3)	12	3
41	IL_16611.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents Isolated non-canonical cWW with bulges (1)	6	3
42	IL_97571.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: New id, no parents Major groove minor groove platform with extra cWW (1)	8	3
43	IL_50560.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: New id, no parents tSH-tHW-tWH-tHS (3)	12	3
44	IL_20072.1 View exemplar Basepair signature: cWW-L-L-tWH-L-L-L-cWW History status: New id, no parents	11	3
45	IL_79066.1 View exemplar Basepair signature: cWW-cSH-tHW-cWW History status: New id, no parents Receptor of 11-nt loop-receptor motif (2) Other IL (1)	8	3
46	IL_32285.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: New id, no parents Quadruple sheared (2)	12	3
47	IL_19199.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	3
48	IL_93809.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	2
49	IL_51049.1 View exemplar Basepair signature: cWW-cHH-cWW History status: New id, no parents	5	2
50	IL_92167.1 View exemplar Basepair signature: cWW-cWW-L-tHS-cWW History status: New id, no parents	8	2
51	IL_46526.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: New id, no parents Major groove platform with extra pair (2)	7	2
52	IL_12738.1 View exemplar Basepair signature: cWW-cWW-cWW History status: New id, no parents	6	2
53	IL_91054.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents Multiple bulged bases (1)	4	2
54	IL_66886.1 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: New id, no parents	10	2
55	IL_69375.1 View exemplar Basepair signature: cWW-tWH-L-tWW-tHW-cSH-cWW History status: New id, no parents	11	2
56	IL_14063.1 View exemplar Basepair signature: cWW-L-L-L-L-cWW History status: New id, no parents	8	2
57	IL_00912.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: New id, no parents	12	2
58	IL_94804.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
59	IL_95922.1 View exemplar Basepair signature: cWW-cSS-cSS-R-cWW History status: New id, no parents 180 degree turn (1)	5	2
60	IL_45524.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-cSS-R-R-L-cWW History status: New id, no parents	13	2
61	IL_88216.1 View exemplar Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-bif-cWW History status: New id, no parents	13	2
62	IL_90186.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, no parents	5	2
63	IL_05551.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents Minor groove platform (2)	6	2
64	IL_03743.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: New id, no parents Double sheared (2)	8	2
65	IL_97379.1 View exemplar Basepair signature: cWW-R-R-tWH-L-R-cWW History status: New id, no parents	10	2
66	IL_03134.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	2
67	IL_94561.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (2)	8	2
68	IL_74598.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-bif-bif-cWW-cWW History status: New id, no parents	14	2
69	IL_20258.1 View exemplar Basepair signature: cWW-tSH-tHS-tHS-bif-cWW History status: New id, no parents	12	2
70	IL_56926.1 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: New id, no parents	14	2
71	IL_43216.1 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: New id, no parents tHW-tHW cross-strand stack (1)	11	2
72	IL_03104.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	4	2
73	IL_38211.1 View exemplar Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW History status: New id, no parents	18	2
74	IL_37113.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tSS-R-cWW History status: New id, no parents Kink-turn (2)	12	2
75	IL_41023.1 View exemplar Basepair signature: cWW-tSH-cWW History status: New id, no parents Minor groove platform (1)	5	1
76	IL_57710.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: New id, no parents	7	1
77	IL_12384.1 View exemplar Basepair signature: cWW-R-cSW-R-R-tHS-cWW History status: New id, no parents	11	1
78	IL_26425.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: New id, no parents	16	1
79	IL_99018.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: New id, no parents	11	1
80	IL_11049.1 View exemplar Basepair signature: cWW-cHW-tHS-cWW History status: New id, no parents	7	1
81	IL_16316.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHH-cWW History status: New id, no parents	11	1
82	IL_43222.1 View exemplar Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW History status: New id, no parents	23	1
83	IL_07297.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: New id, no parents	12	1
84	IL_42196.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW History status: New id, no parents	8	1
85	IL_11425.1 View exemplar Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW History status: New id, no parents	12	1
86	IL_15962.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: New id, no parents	13	1
87	IL_31774.1 View exemplar Basepair signature: cWW-L-L-tSW-tSS-tHW-L-cWW History status: New id, no parents	11	1
88	IL_86068.1 View exemplar Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW History status: New id, no parents	20	1
89	IL_86450.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents Decoding loop related (1)	9	1
90	IL_95642.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: New id, no parents	10	1
91	IL_71097.1 View exemplar Basepair signature: cWW-R-R-R-tSW-L-cWW History status: New id, no parents	10	1
92	IL_35960.1 View exemplar Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW History status: New id, no parents	17	1
93	IL_56913.1 View exemplar Basepair signature: cWW-L-L-L-cWW-L-bif-cWW History status: New id, no parents Vitamin B12 Aptamer (1)	11	1
94	IL_35717.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: New id, no parents	15	1
95	IL_11407.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-L-L-cWW-bif-cWW History status: New id, no parents	16	1
96	IL_35596.1 View exemplar Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R History status: New id, no parents	36	1
97	IL_59808.1 View exemplar Basepair signature: cWW-tSH-tHW-L-bif-cWW History status: New id, no parents	11	1
98	IL_64345.1 View exemplar Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW History status: New id, no parents	11	1
99	IL_43267.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW History status: New id, no parents	12	1
100	IL_97195.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
101	IL_29344.1 View exemplar Basepair signature: cWW-tWW-cWW History status: New id, no parents	6	1
102	IL_78517.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-cWW History status: New id, no parents	11	1
103	IL_44251.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: New id, no parents Tandem non-canonical cWW pairs (1)	8	1
104	IL_44401.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: New id, no parents	18	1
105	IL_33415.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: New id, no parents	14	1
106	IL_04613.1 View exemplar Basepair signature: cWW-tSH-L-R-R-R-R-tSS-cWW History status: New id, no parents	13	1
107	IL_98068.1 View exemplar Basepair signature: cWW-R-R-R-cWW History status: New id, no parents	7	1
108	IL_41004.1 View exemplar Basepair signature: cWW-L-L-cWW History status: New id, no parents	6	1
109	IL_34002.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: New id, no parents	10	1
110	IL_45725.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-tWH-tHS-cWW History status: New id, no parents 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
111	IL_36684.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: New id, no parents	8	1
112	IL_78036.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW History status: New id, no parents	12	1
113	IL_57470.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: New id, no parents	7	1
114	IL_45608.1 View exemplar Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW History status: New id, no parents	14	1
115	IL_81506.1 View exemplar Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW History status: New id, no parents	13	1
116	IL_09195.1 View exemplar Basepair signature: cWW-L-R-R-R-R-R-cWW History status: New id, no parents	10	1
117	IL_59361.1 View exemplar Basepair signature: cWW-L-R-R-cWW-cWW History status: New id, no parents	9	1
118	IL_64505.1 View exemplar Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW History status: New id, no parents Kink-turn related (1)	11	1
119	IL_05704.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
120	IL_28315.1 View exemplar Basepair signature: cWW-tSH-L-R-L-tHS-cWW History status: New id, no parents	11	1
121	IL_61845.1 View exemplar Basepair signature: cWW-L-R-L-tHW-L-L-cWW History status: New id, no parents	11	1
122	IL_53169.1 View exemplar Basepair signature: cWW-L-L-L-tHS-cWW History status: New id, no parents	9	1
123	IL_36463.1 View exemplar Basepair signature: cWW-tSW-L-cWS-tSW-R-R-cWW History status: New id, no parents Symmetric double minor groove platform (1)	9	1
124	IL_23746.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW History status: New id, no parents	14	1
125	IL_80012.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: New id, no parents 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
126	IL_04344.1 View exemplar Basepair signature: cWW-cSH-cSH-cWS-cWW History status: New id, no parents tSH-tHW-tHS with extra cWW pairs (1)	14	1
127	IL_13114.1 View exemplar Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW History status: New id, no parents	14	1
128	IL_72934.1 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: New id, no parents UAA/GAN variation (1)	9	1
129	IL_03585.1 View exemplar Basepair signature: cWW-R-R-tWS-L-R-cWW History status: New id, no parents	10	1
130	IL_46463.1 View exemplar Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW History status: New id, no parents	13	1
131	IL_51308.1 View exemplar Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW History status: New id, no parents	14	1
132	IL_24356.1 View exemplar Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW History status: New id, no parents	13	1
133	IL_12268.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
134	IL_69420.1 View exemplar Basepair signature: cWW-L-R-cWW History status: New id, no parents	6	1
135	IL_77516.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: New id, no parents	13	1
136	IL_49116.1 View exemplar Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW History status: New id, no parents	21	1
137	IL_87696.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: New id, no parents	8	1
138	IL_89325.1 View exemplar Basepair signature: cWW-cWW-bif-cSH-cWW History status: New id, no parents	7	1
139	IL_19086.1 View exemplar Basepair signature: cWW-R-tSH-L-tHS-cWW-cWW History status: New id, no parents	12	1
140	IL_36686.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHS-cWW History status: New id, no parents	11	1
141	IL_36450.1 View exemplar Basepair signature: cWW-cWW-R-cWW History status: New id, no parents Minor groove platform with extra cWW (1)	7	1
142	IL_95581.1 View exemplar Basepair signature: cWW-tSH-R-R-cWW History status: New id, no parents	8	1
143	IL_68474.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: New id, no parents	10	1
144	IL_85137.1 View exemplar Basepair signature: cWW-R-tWH-tHS-cWW History status: New id, no parents tSH-tHW (1)	9	1
145	IL_47351.1 View exemplar Basepair signature: cWW-L-L-L-L-L-L-cWW History status: New id, no parents	10	1
146	IL_72288.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: New id, no parents	8	1
147	IL_83781.1 View exemplar Basepair signature: cWW-R-bif-tHW-tHS-cWW History status: New id, no parents	10	1
148	IL_14190.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: New id, no parents	10	1
149	IL_69475.1 View exemplar Basepair signature: cWW-R-R-cWW History status: New id, no parents	6	1

Coloring options:
Nucleotide numbers

New id, no parents 149;

Internal Loop Motif Atlas Release 4.1 Download Csv Json

Internal Loop Motif Atlas Release 4.1

Download

Csv

Json