Motif Atlas Releases 1.14 and 1.15
Changes in PDB files used for clustering
Release 1.14 has 223 PDB files, release 1.15 has 233 PDB files, 223 of them are identical.
No equivalence class representatives have been replaced.
10 new structures in release 1.15: 4CUV, 4CUX, 4KNQ, 4KQ0, 4KTG, 4L81, 4N0T, 4O26, 4P8Z, 4P9R.
No equivalence class representatives have been obsoleted.
Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.
Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.
PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.
Redistribution of motif instances
Loading the Sankey diagram...
Changes in motif groups
Release 1.14 has 282 motif groups, release 1.15 has 304 motif groups, 167 of them are identical.
63 motif groups were updated, 52 groups are present only in release 1.14, 74 groups are only in release 1.15.
Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:
Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey
Hover over the links connecting the motif groups to see which motif instances were exchanged.
Identical motif groups
| # | Motif id | Instances | Description |
|---|---|---|---|
| 1 | IL_31555.6 | 13 | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 2 | IL_58291.5 | 10 | Recurrent Sub-motif found in junctions |
| 3 | IL_47444.3 | 9 | SRP Loop E-like motif |
| 4 | IL_92114.3 | 9 | GAAA loop receptor "platform" motif |
| 5 | IL_02809.3 | 9 | REV element IL with syn G | Tandem cWW pairs (Not AU or GC) |
| 6 | IL_97057.4 | 7 | |
| 7 | IL_08926.4 | 7 | 23S H91 IL |
| 8 | IL_64847.1 | 7 | Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4. |
| 9 | IL_73000.2 | 7 | cHS-cWS |
| 10 | IL_25230.4 | 6 | Bacterial 5S rRNA Loop E |
| 11 | IL_77263.2 | 6 | Kink-turn from U4 |
| 12 | IL_04397.1 | 5 | |
| 13 | IL_79083.4 | 5 | |
| 14 | IL_71229.1 | 5 | |
| 15 | IL_16166.5 | 4 | 23S H91 IL |
| 16 | IL_39526.4 | 4 | |
| 17 | IL_48918.3 | 4 | Kink-turn variant |
| 18 | IL_94403.6 | 3 | LSU H77 |
| 19 | IL_37171.1 | 3 | LSU H58 IL2 H.m. |
| 20 | IL_05723.2 | 3 | |
| 21 | IL_79955.2 | 3 | SSU Helix (23) h23 IL1 |
| 22 | IL_25271.2 | 3 | SSU Helix 8 (h8) IL E.c. and Yeast |
| 23 | IL_34628.2 | 3 | Kink-turn |
| 24 | IL_06211.3 | 3 | |
| 25 | IL_43946.1 | 3 | |
| 26 | IL_82563.1 | 3 | Thi-box riboswitch T-loop |
| 27 | IL_74876.2 | 3 | Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4. |
| 28 | IL_07300.2 | 3 | |
| 29 | IL_50521.1 | 2 | |
| 30 | IL_39175.1 | 2 | |
| 31 | IL_21495.1 | 2 | |
| 32 | IL_33842.1 | 2 | |
| 33 | IL_87548.1 | 2 | |
| 34 | IL_52940.1 | 2 | |
| 35 | IL_46435.1 | 2 | |
| 36 | IL_30381.1 | 2 | tHS tHH bulge with S-turn |
| 37 | IL_78744.1 | 2 | Quadruple Sheared (tSH-tSH-tHS-tHS) |
| 38 | IL_09587.1 | 2 | |
| 39 | IL_67024.1 | 2 | |
| 40 | IL_94744.1 | 2 | Sarcin-ricin motif with extra cWW GA pair |
| 41 | IL_28003.2 | 2 | |
| 42 | IL_90735.1 | 2 | |
| 43 | IL_92576.1 | 2 | |
| 44 | IL_65137.1 | 2 | Kink-turn like motif in Group I Intron |
| 45 | IL_90877.1 | 2 | |
| 46 | IL_25541.1 | 2 | Triple Sheared with unpaired, inserted A |
| 47 | IL_23414.1 | 2 | |
| 48 | IL_16330.1 | 2 | |
| 49 | IL_31707.1 | 2 | Vitamin B12 aptamer |
| 50 | IL_16415.3 | 2 | SSU Helix 23 (h23) Kink-turn T. thermophilus |
| 51 | IL_21639.1 | 2 | |
| 52 | IL_96446.1 | 2 | |
| 53 | IL_11751.1 | 2 | |
| 54 | IL_09882.1 | 2 | |
| 55 | IL_80494.3 | 2 | LSU H58 IL2 H.m. |
| 56 | IL_60613.1 | 2 | |
| 57 | IL_95150.7 | 2 | |
| 58 | IL_92422.1 | 2 | |
| 59 | IL_97833.1 | 2 | |
| 60 | IL_05641.1 | 2 | |
| 61 | IL_76095.3 | 2 | Motif from Hairpin Ribozyme |
| 62 | IL_70401.1 | 2 | |
| 63 | IL_83250.1 | 1 | 16S h40 3WJ T.th. |
| 64 | IL_80714.1 | 1 | |
| 65 | IL_39324.1 | 1 | |
| 66 | IL_86059.1 | 1 | |
| 67 | IL_97191.1 | 1 | Sarcin-ricin motif with cWW UU instead of tSH basepair. |
| 68 | IL_91379.1 | 1 | |
| 69 | IL_66744.1 | 1 | SSU Helix 21 (h21) IL2 E.coli |
| 70 | IL_28644.1 | 1 | |
| 71 | IL_54450.1 | 1 | |
| 72 | IL_75328.1 | 1 | |
| 73 | IL_06306.1 | 1 | |
| 74 | IL_98924.1 | 1 | |
| 75 | IL_82601.1 | 1 | Tandem cWW water-inserted CU pairs |
| 76 | IL_96920.1 | 1 | SSU Helix 12 (h12) IL |
| 77 | IL_77296.1 | 1 | |
| 78 | IL_87394.1 | 1 | |
| 79 | IL_03808.1 | 1 | |
| 80 | IL_59934.1 | 1 | SSU Helix 23 (h23) Kink-turn E. coli |
| 81 | IL_31006.1 | 1 | tSH-tHW-L-bif-cWW |
| 82 | IL_80652.1 | 1 | |
| 83 | IL_99937.1 | 1 | |
| 84 | IL_81398.1 | 1 | |
| 85 | IL_71685.1 | 1 | Sarcin-like with an intercalated basepair |
| 86 | IL_17682.1 | 1 | Sarcin-ricin motif from Eukaryal LSU Helix 11 |
| 87 | IL_87523.1 | 1 | |
| 88 | IL_03282.1 | 1 | |
| 89 | IL_42891.1 | 1 | |
| 90 | IL_05513.1 | 1 | |
| 91 | IL_63952.1 | 1 | |
| 92 | IL_73656.1 | 1 | |
| 93 | IL_25420.1 | 1 | |
| 94 | IL_83920.1 | 1 | |
| 95 | IL_31754.1 | 1 | Sarcin-ricin H95 23S rRNA E.c. |
| 96 | IL_23639.1 | 1 | tWH-tHS-L-cWW |
| 97 | IL_15205.1 | 1 | |
| 98 | IL_21077.1 | 1 | |
| 99 | IL_94973.1 | 1 | Sarcin-Ricin from Group II Intron with inserted base and poor modeling: |
| 100 | IL_23302.1 | 1 | |
| 101 | IL_88865.1 | 1 | |
| 102 | IL_63253.1 | 1 | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 103 | IL_06468.1 | 1 | 16S h40 3WJ E.c. |
| 104 | IL_89794.1 | 1 | |
| 105 | IL_52509.1 | 1 | |
| 106 | IL_27243.1 | 1 | |
| 107 | IL_25082.1 | 1 | |
| 108 | IL_85510.1 | 1 | |
| 109 | IL_49527.1 | 1 | |
| 110 | IL_57285.1 | 1 | |
| 111 | IL_63133.1 | 1 | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 112 | IL_72293.1 | 1 | |
| 113 | IL_02835.1 | 1 | |
| 114 | IL_06177.1 | 1 | cWW AG or UU |
| 115 | IL_41516.1 | 1 | |
| 116 | IL_36006.1 | 1 | |
| 117 | IL_47687.1 | 1 | |
| 118 | IL_53988.1 | 1 | |
| 119 | IL_75415.1 | 1 | Pseudo-knot forming internal loop |
| 120 | IL_26971.1 | 1 | |
| 121 | IL_88367.1 | 1 | |
| 122 | IL_23448.1 | 1 | |
| 123 | IL_16921.1 | 1 | |
| 124 | IL_26448.1 | 1 | |
| 125 | IL_57977.1 | 1 | |
| 126 | IL_41027.1 | 1 | |
| 127 | IL_12507.1 | 1 | |
| 128 | IL_22909.1 | 1 | |
| 129 | IL_46151.1 | 1 | Triple Sheared with unpaired, inserted A |
| 130 | IL_11778.1 | 1 | |
| 131 | IL_91078.1 | 1 | |
| 132 | IL_97842.1 | 1 | |
| 133 | IL_98655.1 | 1 | Part of H71 Junction in 26S rRNA from Yeast |
| 134 | IL_40527.1 | 1 | Kink-turn |
| 135 | IL_91044.1 | 1 | |
| 136 | IL_27668.1 | 1 | |
| 137 | IL_78513.1 | 1 | |
| 138 | IL_09333.1 | 1 | SSU Helix 8 (h8) IL T. thermophilus |
| 139 | IL_40845.1 | 1 | |
| 140 | IL_03110.1 | 1 | |
| 141 | IL_76263.1 | 1 | |
| 142 | IL_45432.1 | 1 | |
| 143 | IL_80505.1 | 1 | |
| 144 | IL_26868.1 | 1 | |
| 145 | IL_52958.1 | 1 | |
| 146 | IL_20775.1 | 1 | tSH-inserted |
| 147 | IL_86336.1 | 1 | |
| 148 | IL_37347.1 | 1 | |
| 149 | IL_02957.1 | 1 | |
| 150 | IL_41139.1 | 1 | |
| 151 | IL_06847.1 | 1 | Group II Intron IL |
| 152 | IL_27640.1 | 1 | |
| 153 | IL_21254.1 | 1 | SSU Helix 11 (h11) IL Kink-turn T. thermophilus |
| 154 | IL_85805.1 | 1 | |
| 155 | IL_86981.1 | 1 | Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18. |
| 156 | IL_02897.1 | 1 | Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th. |
| 157 | IL_68827.1 | 1 | Reverse Kink-Turn |
| 158 | IL_62296.1 | 1 | |
| 159 | IL_82650.1 | 1 | |
| 160 | IL_11302.1 | 1 | |
| 161 | IL_55649.1 | 1 | |
| 162 | IL_06808.1 | 1 | Double sheared (tSH-tSH) one bulged base. |
| 163 | IL_77014.1 | 1 | |
| 164 | IL_05221.1 | 1 | |
| 165 | IL_91089.1 | 1 | |
| 166 | IL_60649.1 | 1 | Kink-turn |
| 167 | IL_52610.1 | 1 |
Updated motif groups
| # | Motif id | Instances | Description |
|---|---|---|---|
| 1 | IL_97217.13 | 298 | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 2 | IL_41766.8 | 70 | Tandem cWW pairs (Not AU or GC) |
| 3 | IL_39199.6 | 62 | Hoogsteen-edge Platform, Single bulged base |
| 4 | IL_56465.6 | 54 | Single, unpaired intercalated base, consensus A |
| 5 | IL_44540.6 | 51 | Sugar-edge, 1-base platform, consensus tHS |
| 6 | IL_82444.3 | 38 | cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 7 | IL_87904.7 | 35 | Triple sheared (tSH-tHS-tHS) no inserted bases |
| 8 | IL_13959.6 | 31 | Double Sheared (tSH-tHS) |
| 9 | IL_73276.7 | 26 | C-loop |
| 10 | IL_93424.6 | 26 | tSH-inserted-tHW |
| 11 | IL_65553.10 | 24 | Kink-turn |
| 12 | IL_92027.5 | 21 | 16S h21 S8 binding site |
| 13 | IL_55938.6 | 21 | LSU Helix 89 (H89) IL2. cSH Platform. |
| 14 | IL_85647.5 | 20 | Sarcin-ricin parent motif with 15 Nts |
| 15 | IL_67813.2 | 19 | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 16 | IL_24982.7 | 17 | SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif |
| 17 | IL_46648.8 | 16 | 23S H91 IL | Single-Base Intercalation Site |
| 18 | IL_49493.6 | 16 | Sarcin-ricin Parent Motif - bacterial LSU H95 IL |
| 19 | IL_94430.7 | 15 | 16S h32-h33-h34 3WJ |
| 20 | IL_37104.5 | 15 | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 21 | IL_65554.2 | 8 | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 22 | IL_74856.2 | 8 | LSU Helix 89 (H89) IL2 |
| 23 | IL_53635.5 | 8 | LSU Helix 32 (H32) IL |
| 24 | IL_72158.5 | 7 | LSU Helix 62 (H62) IL |
| 25 | IL_86357.5 | 7 | LSU Helix 61 IL2 |
| 26 | IL_13069.5 | 7 | LSU 3WJ H32-H33-H35A |
| 27 | IL_44067.6 | 7 | Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2). |
| 28 | IL_24546.6 | 7 | 23S H41 IL and 16S h18 IL : Has large bulge on one side |
| 29 | IL_70237.5 | 7 | |
| 30 | IL_93568.4 | 7 | Triple Sheared (tSH-tHS-tHS) with wobble cWW. |
| 31 | IL_59864.2 | 6 | |
| 32 | IL_48183.2 | 6 | tSH-tHW-bulge |
| 33 | IL_90133.5 | 6 | |
| 34 | IL_55114.2 | 6 | Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif |
| 35 | IL_82188.3 | 6 | LSU H68 IL from H.m. |
| 36 | IL_16029.2 | 6 | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 37 | IL_02359.5 | 6 | |
| 38 | IL_28572.3 | 5 | 16S h18 kink-turn like motif |
| 39 | IL_47758.3 | 5 | REV element IL with syn G | Tandem cWW pairs (Not AU or GC) |
| 40 | IL_87065.3 | 5 | 23S H91 IL | Single-Base Intercalation Site |
| 41 | IL_95652.4 | 5 | SSU Helix 27 (h27) IL Sarcin-Ricin motif |
| 42 | IL_39980.2 | 5 | |
| 43 | IL_31066.4 | 5 | SSU Helix 44 (h44) extension |
| 44 | IL_15123.2 | 5 | Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th. |
| 45 | IL_34363.3 | 5 | Kink-turn from 23S H42 |
| 46 | IL_01080.2 | 5 | |
| 47 | IL_09530.3 | 4 | Double S-turn motif |
| 48 | IL_30840.3 | 4 | |
| 49 | IL_89252.2 | 4 | |
| 50 | IL_32261.2 | 4 | LSU Helix 89 (H89) IL2 |
| 51 | IL_98421.6 | 4 | SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1 |
| 52 | IL_37053.2 | 4 | Kink-turn from 23S H58 |
| 53 | IL_69536.3 | 4 | LSU Helix 96 (H96) IL2 |
| 54 | IL_37197.2 | 3 | |
| 55 | IL_12204.2 | 3 | |
| 56 | IL_62499.9 | 3 | |
| 57 | IL_72641.2 | 3 | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 58 | IL_12211.2 | 3 | |
| 59 | IL_40892.2 | 3 | |
| 60 | IL_77076.2 | 3 | |
| 61 | IL_45794.2 | 3 | |
| 62 | IL_95908.2 | 2 | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 63 | IL_69106.3 | 2 | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. |
Removed motif groups
| # | Motif id | Instances | Description |
|---|---|---|---|
| 1 | IL_78141.1 | 228 | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 2 | IL_28947.3 | 24 | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 3 | IL_37056.1 | 16 | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 4 | IL_43124.3 | 13 | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases |
| 5 | IL_71837.1 | 8 | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 6 | IL_55214.1 | 8 | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. |
| 7 | IL_92321.4 | 7 | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif |
| 8 | IL_46960.1 | 5 | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 9 | IL_82133.1 | 5 | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 10 | IL_56594.1 | 4 | cWW AG or UU |
| 11 | IL_31663.1 | 4 | 23S H73 ILa : Part of larger Motif |
| 12 | IL_22732.1 | 4 | tSH-inserted-tHS |
| 13 | IL_42251.1 | 4 | |
| 14 | IL_66654.1 | 4 | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 15 | IL_08763.1 | 4 | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL |
| 16 | IL_58586.3 | 3 | |
| 17 | IL_52173.1 | 3 | |
| 18 | IL_06180.1 | 3 | tHS tHH bulge with S-turn |
| 19 | IL_80348.3 | 3 | 23S H91 IL |
| 20 | IL_97509.2 | 3 | Double sheared with wobble cWW. |
| 21 | IL_67887.2 | 3 | |
| 22 | IL_30534.1 | 2 | |
| 23 | IL_43545.1 | 2 | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 24 | IL_87064.1 | 2 | tHS tHH bulge with S-turn |
| 25 | IL_12147.1 | 2 | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 26 | IL_16977.1 | 2 | |
| 27 | IL_90057.1 | 2 | |
| 28 | IL_80093.1 | 2 | |
| 29 | IL_98566.1 | 2 | |
| 30 | IL_09491.1 | 1 | |
| 31 | IL_68767.1 | 1 | |
| 32 | IL_31224.1 | 1 | 23S H91 IL |
| 33 | IL_46306.1 | 1 | |
| 34 | IL_88119.1 | 1 | |
| 35 | IL_59529.1 | 1 | |
| 36 | IL_76486.1 | 1 | Sarcin-ricin motif with syn G |
| 37 | IL_61730.1 | 1 | |
| 38 | IL_91904.1 | 1 | |
| 39 | IL_03625.1 | 1 | |
| 40 | IL_25307.1 | 1 | |
| 41 | IL_41791.1 | 1 | |
| 42 | IL_53323.1 | 1 | |
| 43 | IL_64213.1 | 1 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1 |
| 44 | IL_25771.1 | 1 | |
| 45 | IL_54470.1 | 1 | tHS tHH bulge with S-turn |
| 46 | IL_64589.1 | 1 | |
| 47 | IL_06421.1 | 1 | Single sheared with bulged bases |
| 48 | IL_54954.1 | 1 | Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11. |
| 49 | IL_06471.1 | 1 | |
| 50 | IL_30067.1 | 1 | |
| 51 | IL_43316.1 | 1 | |
| 52 | IL_86453.1 | 1 | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
Added motif groups
| # | Motif id | Instances | Description |
|---|---|---|---|
| 1 | IL_83000.1 | 260 | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 2 | IL_04465.1 | 31 | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 3 | IL_77277.1 | 16 | 23S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. |
| 4 | IL_03128.1 | 14 | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H41 IL and 16S h18 IL : Has large bulge on one side |
| 5 | IL_21761.1 | 11 | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif |
| 6 | IL_84950.1 | 9 | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 7 | IL_11015.1 | 9 | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases |
| 8 | IL_25549.1 | 9 | cWW AG or UU | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 9 | IL_32987.1 | 7 | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 10 | IL_96952.1 | 7 | Double sheared with wobble cWW. |
| 11 | IL_59745.1 | 6 | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. |
| 12 | IL_21427.1 | 5 | tHS tHH bulge with S-turn | tSH-inserted-tHS |
| 13 | IL_09698.1 | 5 | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL |
| 14 | IL_19493.1 | 4 | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 15 | IL_98601.1 | 4 | |
| 16 | IL_22658.1 | 4 | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 17 | IL_49668.1 | 4 | |
| 18 | IL_83339.1 | 4 | |
| 19 | IL_51247.1 | 3 | |
| 20 | IL_45592.1 | 3 | 23S H91 IL |
| 21 | IL_03337.1 | 3 | tSH-inserted-tHS |
| 22 | IL_94519.1 | 3 | |
| 23 | IL_81597.1 | 3 | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | tSH-tHW-bulge |
| 24 | IL_38328.1 | 3 | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 25 | IL_68668.1 | 3 | |
| 26 | IL_26910.1 | 3 | 23S H91 IL |
| 27 | IL_70089.1 | 3 | |
| 28 | IL_00734.1 | 2 | |
| 29 | IL_40041.1 | 2 | |
| 30 | IL_30323.1 | 2 | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW |
| 31 | IL_03252.1 | 2 | |
| 32 | IL_56250.1 | 2 | tHS tHH bulge with S-turn |
| 33 | IL_14901.1 | 2 | tHS tHH bulge with S-turn |
| 34 | IL_37914.1 | 2 | |
| 35 | IL_67128.1 | 2 | |
| 36 | IL_03362.1 | 2 | |
| 37 | IL_17204.1 | 2 | tHS tHH bulge with S-turn |
| 38 | IL_38207.1 | 2 | 23S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 39 | IL_18783.1 | 2 | |
| 40 | IL_49445.1 | 2 | Triple sheared (tSH-tHS-tHS) no inserted bases |
| 41 | IL_98073.1 | 2 | Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11. |
| 42 | IL_06413.1 | 2 | LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1 |
| 43 | IL_19451.1 | 2 | |
| 44 | IL_39439.1 | 2 | |
| 45 | IL_59563.1 | 2 | Sarcin-ricin motif with syn G |
| 46 | IL_98172.1 | 2 | |
| 47 | IL_07252.1 | 1 | |
| 48 | IL_29989.1 | 1 | |
| 49 | IL_70529.1 | 1 | |
| 50 | IL_02257.1 | 1 | |
| 51 | IL_08114.1 | 1 | |
| 52 | IL_40364.1 | 1 | |
| 53 | IL_51572.1 | 1 | |
| 54 | IL_59907.1 | 1 | |
| 55 | IL_72367.1 | 1 | |
| 56 | IL_86060.1 | 1 | |
| 57 | IL_99784.1 | 1 | |
| 58 | IL_43284.1 | 1 | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 59 | IL_54696.1 | 1 | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. |
| 60 | IL_61352.1 | 1 | |
| 61 | IL_73367.1 | 1 | |
| 62 | IL_89463.1 | 1 | |
| 63 | IL_35267.1 | 1 | |
| 64 | IL_65681.1 | 1 | |
| 65 | IL_92886.1 | 1 | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif |
| 66 | IL_22953.1 | 1 | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) |
| 67 | IL_47702.1 | 1 | |
| 68 | IL_57079.1 | 1 | |
| 69 | IL_79910.1 | 1 | |
| 70 | IL_48036.1 | 1 | |
| 71 | IL_57359.1 | 1 | 23S H91 IL |
| 72 | IL_68457.1 | 1 | tSH-inserted-tHS |
| 73 | IL_25926.1 | 1 | |
| 74 | IL_58270.1 | 1 |