0.4 | 0.5

Changes in PDB files used for clustering

Release 0.4 has 142 PDB files, release 0.5 has 171 PDB files, 137 of them are identical.

4 equivalence classes changed representatives: 1L9A → 1MFQ, 3HL2 → 3A3A, 3HHN → 3IVK, 3F1H → 3PYO.

30 new structures in release 0.5: 1J2B, 1KOG, 1NBS, 1T0K, 1U63, 1U6B, 1UN6, 1X8W, 1Y0Q, 1YKV, 2A64, 2AW7, 2DER, 2IL9, 2QBG, 2XXA, 2XZM, 2ZZM, 353D, 361D, 387D, 3DHS, 3IWN, 3KTW, 3NPB, 3O30, 3O58, 3P49, 3Q1Q, 3R4F.

Obsolete: 3F1H → 4V67.

Help Every Motif Atlas release is based on a representative set of PDB files. When comparing two releases, it's important to know how the input data changed.

Representative sets are quite stable in time, but PDB files from the older releases can be replaced by newer PDB files or removed from the set altogether if the structure is obsoleted by PDB without replacement.

PDB files from the newer release either replace representatives in the existing equivalence classes or come from new equivalence classes.

Redistribution of motif instances

Loading the Sankey diagram...

Changes in motif groups

Release 0.4 has 162 motif groups, release 0.5 has 357 motif groups, 44 of them are identical.

8 motif groups were updated, 110 groups are present only in release 0.4, 305 groups are only in release 0.5.

Help The Sankey diagram shows redistribution of motif instances (loops) between two releases. The rectangles represent the motif groups and are colored as follows:

Added motif groups: green
Removed motif groups: grey
Updated motif groups: orange
Added motif instances: green
Removed motif instances: grey

Hover over the links connecting the motif groups to see which motif instances were exchanged.

Identical motif groups

#	Motif id	Instances	Description
1	IL_39526.1	5
2	IL_76095.1	3
3	IL_61616.1	3
4	IL_82563.1	3	Thi-box riboswitch T-loop
5	IL_16360.1	2
6	IL_57870.1	2
7	IL_19202.1	2
8	IL_62718.1	2
9	IL_94744.1	2	Sarcin-ricin motif with extra cWW GA pair
10	IL_09882.1	2
11	IL_74876.1	2
12	IL_12233.1	1
13	IL_31006.1	1	tSH-tHW-L-bif-cWW
14	IL_43316.1	1
15	IL_75688.1	1	Part of Helix 71 (H71) junction in 23S of D.r.
16	IL_83485.1	1
17	IL_14812.1	1
18	IL_31793.1	1	Kink-turn from 16S H23
19	IL_56170.1	1
20	IL_86981.1	1	Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
21	IL_00209.1	1
22	IL_35361.1	1
23	IL_77014.1	1
24	IL_87637.1	1
25	IL_02835.1	1
26	IL_39324.1	1
27	IL_77549.1	1
28	IL_88865.1	1
29	IL_03110.1	1
30	IL_20775.1	1	tSH-inserted
31	IL_81728.1	1
32	IL_89283.1	1
33	IL_04040.1	1
34	IL_21254.1	1	SSU Helix 11 (h11) IL Kink-turn T. thermophilus
35	IL_40845.1	1
36	IL_63952.1	1
37	IL_82472.1	1
38	IL_09333.1	1	SSU Helix 8 (h8) IL T. thermophilus
39	IL_22579.1	1
40	IL_41009.1	1
41	IL_65519.1	1
42	IL_26241.1	1
43	IL_41791.1	1
44	IL_83250.1	1	16S h40 3WJ T.th.

Updated motif groups

#	Motif id	Instances
1	IL_82367.4	7
2	IL_82768.2	6
3	IL_11167.3	4
4	IL_09233.2	3
5	IL_10326.2	3
6	IL_55113.2	3
7	IL_78493.3	3
8	IL_57785.3	2

Removed motif groups

#	Motif id	Instances
1	IL_90629.2	117
2	IL_89429.1	40
3	IL_96481.1	39
4	IL_40289.2	38
5	IL_89723.1	36
6	IL_14877.3	30
7	IL_11363.2	30
8	IL_45564.3	26
9	IL_83385.2	18
10	IL_47124.1	15
11	IL_30798.2	13
12	IL_33923.2	11
13	IL_05994.1	11
14	IL_87158.1	11
15	IL_33742.1	10
16	IL_17977.2	10
17	IL_36534.1	9
18	IL_26410.1	9
19	IL_13862.1	8
20	IL_29746.3	8
21	IL_87014.1	8
22	IL_62089.1	7
23	IL_92741.1	7
24	IL_63717.2	7
25	IL_10358.1	6
26	IL_90126.1	6
27	IL_98756.1	6
28	IL_58849.2	6
29	IL_65962.2	5
30	IL_72638.1	5
31	IL_36906.1	5
32	IL_26097.3	5
33	IL_75673.1	5
34	IL_71234.1	4
35	IL_21059.2	4
36	IL_45778.1	4
37	IL_06484.1	4
38	IL_78938.1	4
39	IL_39216.3	4
40	IL_49609.1	4
41	IL_08960.1	3
42	IL_26781.2	3
43	IL_41412.1	3
44	IL_76212.1	3
45	IL_87744.2	3
46	IL_43956.2	3
47	IL_53203.1	3
48	IL_20844.1	3
49	IL_53918.3	3
50	IL_11419.1	3
51	IL_85104.1	3
52	IL_19669.1	3
53	IL_73059.1	3
54	IL_12437.1	3
55	IL_19801.1	3
56	IL_99336.1	3
57	IL_20017.1	3
58	IL_20048.1	2
59	IL_09020.1	2
60	IL_20796.3	2
61	IL_62527.1	2
62	IL_70339.1	2
63	IL_83664.1	2
64	IL_03814.1	2
65	IL_64838.1	2
66	IL_71700.2	2
67	IL_77567.1	2
68	IL_54826.1	2
69	IL_78483.1	2
70	IL_57193.1	2
71	IL_90238.1	2
72	IL_08760.1	2
73	IL_13561.1	2
74	IL_59557.1	2
75	IL_82266.1	2
76	IL_50503.1	1
77	IL_69395.1	1
78	IL_02449.1	1
79	IL_14789.1	1
80	IL_26786.1	1
81	IL_76474.1	1
82	IL_87816.1	1
83	IL_95275.1	1
84	IL_28626.1	1
85	IL_35391.1	1
86	IL_44310.1	1
87	IL_53598.1	1
88	IL_76973.1	1
89	IL_84308.1	1
90	IL_05830.1	1
91	IL_21031.1	1
92	IL_29499.1	1
93	IL_35496.1	1
94	IL_84453.1	1
95	IL_96669.1	1
96	IL_19417.1	1
97	IL_98138.1	1
98	IL_12278.1	1
99	IL_22078.1	1
100	IL_67328.1	1
101	IL_86213.1	1
102	IL_06499.1	1
103	IL_33041.1	1
104	IL_47295.1	1
105	IL_67805.1	1
106	IL_74043.1	1
107	IL_80837.1	1
108	IL_90454.1	1
109	IL_33600.1	1
110	IL_69192.1	1

Added motif groups

#	Motif id	Instances	Description
1	IL_61133.1	221
2	IL_24421.1	160
3	IL_78918.1	51
4	IL_42829.1	40
5	IL_91286.1	39
6	IL_91075.1	27
7	IL_11266.1	25
8	IL_68930.1	20
9	IL_03728.1	17
10	IL_49994.1	15
11	IL_24982.1	14
12	IL_31491.1	13
13	IL_93479.1	12
14	IL_78374.1	12
15	IL_33235.1	12
16	IL_97493.1	11
17	IL_70242.1	9
18	IL_95015.1	9
19	IL_79143.1	9
20	IL_33032.1	9
21	IL_34442.1	9
22	IL_06751.1	9
23	IL_87738.1	9
24	IL_47067.1	9
25	IL_16498.1	8
26	IL_62873.1	8
27	IL_60288.1	8
28	IL_38336.1	8
29	IL_95965.1	8
30	IL_68211.1	8
31	IL_37996.1	7
32	IL_80407.1	7
33	IL_98047.1	7
34	IL_28693.1	7
35	IL_94031.1	6
36	IL_33144.1	6
37	IL_87608.1	6
38	IL_55276.1	6
39	IL_07547.1	6
40	IL_29784.1	6
41	IL_96804.1	5
42	IL_66688.1	5
43	IL_61831.1	5
44	IL_97736.1	5
45	IL_01239.1	5
46	IL_14611.1	5
47	IL_76133.1	5
48	IL_58440.1	5
49	IL_81468.1	4
50	IL_23428.1	4
51	IL_93335.1	4
52	IL_78732.1	4
53	IL_52210.1	4
54	IL_31066.1	4
55	IL_99388.1	4
56	IL_76795.1	4
57	IL_94438.1	4
58	IL_38028.1	4
59	IL_20328.1	4
60	IL_89295.1	4
61	IL_86221.1	4
62	IL_70237.1	4
63	IL_86121.1	4
64	IL_19771.1	4
65	IL_30092.1	4
66	IL_34435.1	3
67	IL_58388.1	3
68	IL_16722.1	3
69	IL_29583.1	3
70	IL_74605.1	3
71	IL_21341.1	3
72	IL_67582.1	3
73	IL_68345.1	3
74	IL_62437.1	3
75	IL_28399.1	3
76	IL_89586.1	3
77	IL_60708.1	3
78	IL_97554.1	3
79	IL_13224.1	3
80	IL_13468.1	3
81	IL_44213.1	3
82	IL_01628.1	3
83	IL_23262.1	3
84	IL_47671.1	3
85	IL_81608.1	3
86	IL_89613.1	3
87	IL_76618.1	2
88	IL_44024.1	2
89	IL_34305.1	2
90	IL_43333.1	2
91	IL_82794.1	2
92	IL_20679.1	2
93	IL_97833.1	2
94	IL_63749.1	2
95	IL_67617.1	2
96	IL_95150.1	2
97	IL_52844.1	2
98	IL_25228.1	2
99	IL_98566.1	2
100	IL_51412.1	2
101	IL_71985.1	2
102	IL_49468.1	2
103	IL_14562.1	2
104	IL_67609.1	2
105	IL_56765.1	2
106	IL_16166.1	2
107	IL_97713.1	2
108	IL_36852.1	2
109	IL_16614.1	2
110	IL_03978.1	2
111	IL_77104.1	2
112	IL_45797.1	2
113	IL_79955.1	2
114	IL_19935.1	2
115	IL_01955.1	2
116	IL_02691.1	2
117	IL_50521.1	2
118	IL_75000.1	2
119	IL_62499.1	2
120	IL_42644.1	2
121	IL_76760.1	2
122	IL_39081.1	2
123	IL_66718.1	2
124	IL_54567.1	2
125	IL_43113.1	2
126	IL_56029.1	2
127	IL_88684.1	2
128	IL_18488.1	2
129	IL_46873.1	2
130	IL_50828.1	2
131	IL_99637.1	2
132	IL_95652.1	2
133	IL_68486.1	2
134	IL_99404.1	2
135	IL_80202.1	2
136	IL_75870.1	2
137	IL_69110.1	2
138	IL_52634.1	2
139	IL_73213.1	2
140	IL_48650.1	1
141	IL_49866.1	1
142	IL_98615.1	1
143	IL_66744.1	1	SSU Helix 21 (h21) IL2 E.coli
144	IL_53988.1	1
145	IL_22907.1	1
146	IL_19830.1	1
147	IL_84234.1	1
148	IL_48709.1	1
149	IL_17323.1	1
150	IL_53202.1	1
151	IL_63760.1	1
152	IL_30763.1	1
153	IL_47493.1	1
154	IL_39643.1	1
155	IL_27364.1	1
156	IL_91604.1	1
157	IL_95813.1	1
158	IL_75328.1	1
159	IL_96697.1	1
160	IL_56093.1	1
161	IL_85789.1	1
162	IL_60867.1	1
163	IL_64973.1	1
164	IL_05462.1	1
165	IL_92348.1	1
166	IL_44362.1	1
167	IL_32080.1	1
168	IL_50881.1	1
169	IL_08947.1	1
170	IL_05754.1	1
171	IL_09107.1	1
172	IL_75765.1	1
173	IL_72595.1	1
174	IL_87056.1	1
175	IL_63624.1	1
176	IL_59905.1	1
177	IL_97912.1	1
178	IL_84341.1	1
179	IL_40914.1	1
180	IL_01251.1	1
181	IL_76093.1	1
182	IL_07220.1	1
183	IL_30028.1	1
184	IL_76263.1	1
185	IL_80505.1	1
186	IL_77562.1	1
187	IL_45155.1	1
188	IL_96468.1	1
189	IL_90734.1	1
190	IL_48723.1	1
191	IL_74594.1	1
192	IL_01299.1	1
193	IL_55934.1	1	kink-turn-like
194	IL_29920.1	1
195	IL_48662.1	1
196	IL_25897.1	1
197	IL_00739.1	1
198	IL_26134.1	1
199	IL_84840.1	1
200	IL_47741.1	1
201	IL_20815.1	1
202	IL_49911.1	1
203	IL_17247.1	1
204	IL_02478.1	1
205	IL_99663.1	1
206	IL_56237.1	1
207	IL_58873.1	1
208	IL_12536.1	1
209	IL_40672.1	1
210	IL_88403.1	1
211	IL_35012.1	1
212	IL_55649.1	1
213	IL_02980.1	1
214	IL_37715.1	1
215	IL_02690.1	1
216	IL_40287.1	1
217	IL_49431.1	1
218	IL_56427.1	1
219	IL_31920.1	1
220	IL_67277.1	1
221	IL_61401.1	1
222	IL_51922.1	1
223	IL_98023.1	1
224	IL_05865.1	1
225	IL_64796.1	1
226	IL_69599.1	1
227	IL_74622.1	1
228	IL_75415.1	1	Pseudo-knot forming internal loop
229	IL_85805.1	1
230	IL_92280.1	1
231	IL_50767.1	1
232	IL_68827.1	1	Reverse Kink-Turn
233	IL_65931.1	1
234	IL_55167.1	1
235	IL_06468.1	1	16S h40 3WJ E.c.
236	IL_52958.1	1
237	IL_13649.1	1
238	IL_31754.1	1	Sarcin-ricin H95 23S rRNA E.c.
239	IL_63662.1	1
240	IL_69835.1	1
241	IL_10746.1	1
242	IL_65001.1	1
243	IL_28819.1	1
244	IL_79913.1	1
245	IL_95735.1	1
246	IL_08624.1	1
247	IL_58040.1	1
248	IL_89238.1	1
249	IL_78858.1	1
250	IL_82650.1	1
251	IL_26868.1	1
252	IL_47687.1	1
253	IL_59183.1	1
254	IL_01618.1	1
255	IL_23044.1	1
256	IL_92311.1	1
257	IL_12486.1	1
258	IL_12912.1	1
259	IL_15075.1	1
260	IL_29949.1	1
261	IL_34589.1	1
262	IL_82910.1	1
263	IL_78215.1	1
264	IL_58626.1	1
265	IL_13608.1	1
266	IL_65375.1	1
267	IL_66760.1	1
268	IL_87841.1	1
269	IL_67286.1	1
270	IL_18581.1	1
271	IL_33509.1	1
272	IL_86397.1	1
273	IL_11302.1	1
274	IL_63867.1	1
275	IL_39230.1	1
276	IL_52509.1	1
277	IL_56096.1	1
278	IL_00439.1	1
279	IL_37987.1	1
280	IL_36240.1	1
281	IL_89769.1	1
282	IL_40303.1	1
283	IL_58545.1	1
284	IL_79119.1	1
285	IL_42300.1	1
286	IL_54320.1	1
287	IL_98249.1	1
288	IL_21025.1	1
289	IL_71942.1	1
290	IL_57517.1	1
291	IL_34469.1	1
292	IL_40073.1	1
293	IL_59424.1	1
294	IL_97073.1	1
295	IL_65788.1	1
296	IL_99755.1	1
297	IL_63594.1	1
298	IL_36331.1	1
299	IL_50779.1	1
300	IL_99757.1	1
301	IL_57195.1	1
302	IL_97624.1	1
303	IL_26929.1	1
304	IL_01594.1	1
305	IL_10310.1	1

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